Robust completion time distributions in complex biological networks

Ilya Nemenman (February 6, 2012)

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Abstract

Ilya Nemenman, Physics, Emory University

Biochemical processes typically involve huge numbers of individual reversible steps, each with its own dynamical rate constants. For example, kinetic proofreading processes rely upon numerous sequential reactions in order to guarantee the precise construction of specific macromolecules. I will present a characterization of the first passage (completion) time distributions for such processes. I will argue that, for a wide class of biochemical kinetics systems related to kinetic proofreading, the completion time time behavior simplifies as the system size grows: it becomes either deterministic or exponentially distributed, with a very narrow transition between the two regimes. In both regimes, the dynamical complexity of the full system is trivial compared to its apparent structural complexity. This robust simplification of completion time distributions is independent of many microscopic details of the signaling systems and can be utilized for efficient control of cellular response properties. Even further simplifications are possible when one considers dynamics of many coupled kinetic proofreading enabled receptors, which can attain low activation noise with robust mean time to activation.